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Theranostics 2019; 9(6):1580-1598. doi:10.7150/thno.30302 This issue Cite

Research Paper

Nano-Structural Effects on Gene Transfection: Large, Botryoid-Shaped Nanoparticles Enhance DNA Delivery via Macropinocytosis and Effective Dissociation

Wenyuan Zhang^1,2, Xuejia Kang^1,3, Bo Yuan⁴, Huiyuan Wang¹, Tao Zhang¹, Mingjie Shi¹, Zening Zheng^1,3, Yuanheng Zhang¹, Chengyuan Peng¹, Xiaoming Fan¹, Huaiyu Yang^1,5, Youqing Shen⁶, Yongzhuo Huang^1,2

1. State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China
2. University of Chinese Academy of Sciences, Beijing, 100049, China
3. Institute of Tropical Medicine, Guangzhou University of Chinese Medicine, Guangzhou 510405, China
4. Affiliated Hospital of Shandong University of Traditional Chinese Medicine, Jinan 250011, China
5. East China Normal University School of Life Sciences, Shanghai 200241, China
6. College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China

✉ Corresponding author: Yongzhuo Huang, Ph.D., Professor of Pharmaceutics, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 501 Haike Rd, Shanghai 201203, China. Tel/Fax: +86-21-2023-1981; Email: yzhuangac.cn

Abstract

Effective delivery is the primary barrier against the clinical translation of gene therapy. Yet there remains too much unknown in the gene delivery mechanisms, even for the most investigated polymeric carrier (i.e., PEI). As a consequence, the conflicting results have been often seen in the literature due to the large variability in the experimental conditions and operations. Therefore, some key parameters should be identified and thus strictly controlled in the formulation process.

Methods: The effect of the formulation processing parameters (e.g., concentration or mixture volume) and the resulting nanostructure properties on gene transfection have been rarely investigated. Two types of the PEI/DNA nanoparticles (NPs) were prepared in the same manner with the same dose but at different concentrations. The microstructure of the NPs and the transfection mechanisms were investigated through various microscopic methods. The therapeutic efficacy of the NPs was demonstrated in the cervical subcutaneous xenograft and peritoneal metastasis mouse models.

Results: The high-concentration process (i.e., small reaction-volume) for mixture resulted in the large-sized PEI/DNA NPs that had a higher efficiency of gene transfection, compared to the small counterpart that was prepared at a low concentration. The microstructural experiments showed that the prepared small NPs were firmly condensed, whereas the large NPs were bulky and botryoid-shaped. The large NPs entered the tumor cells via the macropinocytosis pathway, and then efficiently dissociated in the cytoplasm and released DNA, thus promoting the intranuclear delivery. The enhanced in vivo therapeutic efficacy of the large NPs was demonstrated, indicating the promise for local-regional administration.

Conclusion: This work provides better understanding of the effect of formulation process on nano-structural properties and gene transfection, laying a theoretical basis for rational design of the experimental process.

Keywords: gene delivery, PEI, micropinocytosis, TRAIL, local-regional gene therapy, cervical cancer

Introduction

The common purpose of gene delivery is to deliver the therapeutic nucleic acids from the application site to the pathological tissues, following by intracellular transport, and targeting the specific cytoplasm components or the nucleus [1]. PEI has become one of the most commonly used non-viral gene vectors due to its high transfection efficiency in mammalian cells and ready availability. Despite the extensive application of the PEI, the conflicting results of PEI-mediated transfection have been often seen in literature. It could be accounted for the large variability in the experimental conditions and operations in transfection experiments [2-4]. It is known that the transfection efficiency of the PEI/DNA NPs is affected by the N/P ratio of PEI and DNA, serum content of culture medium, etc. Indeed, such changes resulted in the difference of particle size and surface charge, and consequently the transfection efficacy.

The formation of the PEI/DNA nanocomplex is first driven by the electrostatic interaction and finally by entropy, when mixing the positive charges of the PEI and the negative charges of the DNA together [5, 6]. Therefore, such formation is highly dynamic and variable, profoundly affected by the parameters of the process. There remains much room to explore because the mechanisms of PEI-mediated transfection have not been well understood yet [1, 2, 7]. Usually, much attention has been placed in how the changing ratio of the two reagents of the PEI/DNA affected the transfection efficiency. For example, a low N/P ratio of PEI/DNA tends to form the large-sized complexes, while a high N/P ratio was the opposite [8]. Moreover, the use of the different molecular weight of PEI was also a major factor for controlling particle size; for example, low-molecular-weight PEI generally exhibited weaker condensation ability to DNA than the high-molecular-weight PEI, thus resulting in larger particle size [8].

However, the operational changes of the process may affect the physicochemical properties and the transfection results as well. Unfortunately, it is little known about the influence of the operational changes on the resulting PEI/DNA NPs. For example, it is often seen in literature the variable transfection results even with the same dose of PEI/DNA and the cell lines. Usually, the PEI/DNA ratio or dose is considered as a critical parameter, but the operation concentration and liquid volume are largely ignored and missed in the reports. From an aspect of pharmaceutical engineering, the setting of the processing parameters is also an essential consideration for formulation. Yet, the important effect of the process setting on transfection has not been realized.

In this study, we demonstrated the significant effect of the operation concentration or mixture volume on the formation of the nanocomplex of PEI/ DNA, as well as their size and morphology. Moreover, it was also demonstrated that the large-sized NPs possessed enhanced gene transfection efficiency and the promising application in local-regional therapies.

Results

The mixture volume affected transfection efficiency of PEI/DNA

At a fixed dose, a small-volume mixture process was related to using a high concentration of PEI and DNA, and a large-volume process was related to low concentration (Scheme 1). It was revealed that the mixture volume of PEI and DNA is a crucial factor of the formulation process for controlling the transfection of the PEI/DNA NPs. A small-volume process (i.e., a high concentration of PEI and DNA, termed PEI/DNA_high) resulted in better efficacy. The cellular uptake study of the NPs was conducted in the HeLa cells using flow cytometry and confocal microscopy. For both the NPs at the same dose, the positive rate was greater than 80% (i.e., PEI/DNA_low 82% and PEI/ DNA_high 91%) (Figure 1A-C). However, the total fluorescence intensity of the PEI/DNA_high group showed a 3.7-fold increase, compared to the PEI/DNA_low (Figure 1D). The fluorescence intensity results suggested that there was a greater amount of the PEI/ DNA_high NPs in cellular uptake.

 Scheme 1 

The scheme of self-assembly process of the two groups of PEI/DNA NPs.

The gene transfection efficiency of these two NPs was investigated. In Figure 2A-D, peGFP-N1 was used as the reporter gene; consistent with the cellular uptake results, the transfection positive rate of the PEI/DNA_high NPs was significantly higher, displaying 4.9-fold higher than that of the PEI/DNA_low NPs (Figure 2C). Accordingly, the total fluorescence intensity of the PEI/DNA_high NPs, reflecting the level of GFP expression, was 11.9-fold higher than that of the PEI/DNA_low NPs (Figure 2D).

Other reporter genes (e.g., the red fluorescence protein-encoding pRFP and luciferase-encoding pGL4.13) were also applied for the transfection studies, and similar results were found (Figure 2E-H), both displaying an appropriate 10-fold increase in the PEI/DNA_high group.

 Figure 1 

The cellular uptake results of the two groups of NPs. (A) Confocal images. The NPs are shown in green. Scale bar, 20 μm. (B-D) FACS analysis of cellular uptake, and the quantitative analysis of the cellular uptake rate and total fluorescence intensity.

We further tested the intracellular uptake and transfection efficiency of these two groups of PEI/DNA NPs in other types of cells. Dendritic cells (DCs) are the most potent antigen-presenting cells, and the major target for cancer DNA vaccines. The results in DC2.4 cells and bone marrow-derived dendritic cells (BMDCs) also showed that the PEI/DNA_high NPs had the enhanced cellular uptake and gene transfection compared to the PEI/DNA_low NPs (Figure S1). Moreover, it was also found that the PEI/DNA_high NPs had the enhanced gene transfection compared to the PEI/DNA_low NPs in the MCF-7 cells, H/T cells and A549T cells (Figure S2).

The branched PEI_25k was also used to investigate. Similarly, the b-PEI/DNA_high NPs had a larger particle size compared to the b-PEI/DNA_low NPs (542 nm vs. 75 nm) (Figure S3A). It was also observed that the b-PEI/DNA_high NPs improved the gene transfection compared to the b-PEI/DNA_low NPs (Figure S3B-D). Moreover, the b-PEI/DNA_high NPs had the enhanced gene transfection compared to the b-PEI/DNA_low NPs in MCF-7, H/T and A549T cells (Figure S4).

The mixture volume affected the morphology of the PEI/DNA NPs

The findings above were interesting, which inspired us to further investigate the mechanisms of how the different volume process affected the transfection. The morphology of these two NPs was examined. It was revealed that a small-volume process (i.e., with high mixture concentration) resulted in the large particles (denoted as PEI/DNA_high NPs), compared the large-volume process that led to the small particles (i.e., denoted as PEI/DNA_low NPs), displaying 581 nm vs 89 nm. Both of the PEI/DNA_high and PEI/DNA_low NPs remained stable in water, HEPES buffer, or the culture medium with FBS (Figure S5A-C). There was no difference between the two NPs in the zeta potential (Figure S5D-F).

The microstructure of the NPs was investigated by atomic force microscopy (AFM). The 2D and 3D AFM images showed that PEI efficiently condensed DNA and form the particle-shaped nanocomplex for both PEI/DNA_high and PEI/DNA_low (Figure 3A). The section analysis (vertical distance for 2D AFM images) and the particle peak height for 3D images were analyzed by NanoScope Analysis software. Both of the section analysis and the average value of particle peak height confirmed the larger size of the PEI/DNA_high NPs compared to the PEI/DNA_low NPs (Figure 3B-C).

The internal microstructure of the NPs was observed using the stimulated emission depletion (STED) microscopy technique by dual-labeling (DNA, green; PEI, red). In the PEI/DNA_low NPs, DNA was almost co-localized with PEI, demonstrating the compact condensation, while the PEI/DNA_high NPs displayed a less compact pattern and a botryoid shape (Figure 4). It suggested that the formulation process via a small-volume mixture that was at a high concentration condition resulted in the weak interaction between DNA and PEI, and the loose structure and large size.

 Figure 2 

The results of transfection experiments of the two groups of PEI/DNA NPs. (A, F) Fluorescence images of GFP and RFP expression. GFP is shown in green, and RFP is shown in red. Scale bar, 100 μm. (B-D, G-H) FACS analysis of GFP and RFP expression in HeLa cells, and the quantitative analysis of positive transfection rate and total fluorescence intensity of HeLa cells. (E) Luciferase expression.

 Figure 3 

AFM measurements results. (A) The 2D and 3D AFM images of the NPs. Scale bar, 1 μm. (B) Section analysis of the NPs in the 2D AFM images. (C) The particle peak height of the two groups of NPs.

 Figure 4 

The STED images of the PEI/DNA_low NPs (A) and the PEI/DNA_high NPs (B). PEI is shown in red, DNA is shown in green.

Ionic polymers contain various amount of charges (e.g., -NH₃⁺ in PEI, and -PO₄^- in DNA), depending on the ionizing degree in aqueous solution. Our results demonstrated that PEI at low concentration possessed high zeta potential and large hydrodynamic size (Figure S6), compared to that at high concentration, indicating the enhanced ionization and extension of PEI polymer chains at low concentration. As a consequence, the polymers (PEI and DNA) at low concentration yielded a stronger interaction due to the adequate exposure the charged segments at each chain. Our conclusion was in accordance with a previous report that the high degree of ionization for the cationic polymer (poly[2- (dimethylamino)ethyl methacrylate] or DMAEMA) at a favorable pH resulted in greater binding affinities with DNA and the compact complexation structure [9].

The structural difference affected the cellular uptake pathway

The cellular uptake pathway was investigated using the total internal reflection fluorescence microscopy (TIRFM) for detecting the single cell tracking at a 100-nm thickness. As shown in Figure 5, Supplementary Video 1, and Figure S7, there was an interesting phenomenon that the PEI/DNA_high NPs interacted with the pseudopod-like extension of the cell and was then engulfed by the cells. The cellular uptake of the PEI/DNA_high NPs was analyzed by single-particle tracking (SPT) technique. SPT was a technique using the tracking algorithm to address the principal challenges such as particle motion heterogeneity, high particle density, temporary particle disappearance, and particle splitting. The algorithm first links the particles between consecutive frames, and then links the resulting track segments into complete trajectories [10].

In Figure 5A, the cellular uptake of the PEI/DNA_high NPs (red) was clearly tracked the process from outside of the cells to enter the cells; and the trajectory of the bulky NPs was shown in amplification (Figure 5B). In Figure 5C (Supplementary Video 2), the cellular uptake of the PEI/DNA_high NPs was real-time tabbed with the trajectories. The normalized lifetime histogram of trajectories was shown in Figure 5D. The mean square displacement of the PEI/DNA_high NPs, representing the diffusion coefficient of particles, was analyzed during its movement outside and inside the cell (Figure 5E). It indicated two different movements of the bulky NPs when it was in or out of the cell. The trajectory of the PEI/DNA_high NPs in Figure 5C was shown as x coordinate, y coordinate and amplitude over time (Figure 5F). And no particle splitting events were found, suggesting there was no disassociation during the cellular uptake. These results indicated that the pseudopod-mediated mechanism could be involved in the cellular uptake of the large PEI/DNA_high NPs. It has been reported that the pseudopod interaction was a pathway for the cellular uptake of a bacteria [11].

Endocytosis pathway study

To investigate the endocytosis pathway, the cells were pre-treated with various endocytosis inhibitors (chlorpromazine, an inhibitor of clathrin-mediated endocytosis [12]; nystatin, an inhibitor of caveolae- mediated endocytosis [13]; or cytochalasin D, an inhibitor of macropinocytosis) [14], and then conducted the gene transfection experiments. peGFP-N1 was used as the reporter gene. The relative positive rate of transfection and protein expression level in the cells were quantitatively analyzed by FACS.

Chlorpromazine treatment dramatically decreased the relative positive rate of transfection and protein expression level in the PEI/DNA_low NPs group, but no major impact on the PEI/DNA_high NPs group (Figure 6A, B). It indicated that clathrin-mediated endocytosis was a primary mechanism for the PEI/ DNA_low NPs. By contrast, cytochalasin D treatment led to the remarkable decrease in the relative positive rate of transfection and protein expression level in the PEI/DNA_high NPs group but yielded minor effect on the PEI/DNA_low NPs group (Figure 6C, D). It revealed macropinocytosis was a main pathway for the PEI/DNA_high NPs. Nystatin (< 20 µM) yielded very minor inhibition of transfection in both the NPs, suggesting that caveolae-mediated endocytosis was not essential for both NPs (Figure 6E, F).

The clathrin-mediated endocytosis pathway for NPs was size-dependent, showing an observed upper limit for internalization of about 200 nm [15]; therefore, the NPs with a size under 200 nm was favorable for the clathrin pathway. However, the clathrin-coated vesicles finally enter the endo/ lysosomes, susceptible to degradation, which was disadvantageous to gene transfection [16, 17]. The macropinosomes may not mature to late endosomes or fuse with lysosomes [18]. Due to the physical characteristics of leakage of macropinosomes, the NPs can easily escape into the cytoplasm, which is helpful for facilitating gene transfection [19, 20]. Moreover, the macropinocytosis can take up the large cargo, which contains a high amount of DNA, and therefore, it is thought that the macropinocytic pathway provides a benefit of increasing uptake [21]. The analysis above provided a possible explanation that the large NPs of PEI/DNA_high performed higher uptake amount of DNA and more efficient transfection than the PEI/DNA_low NPs.

 Figure 5 

TIRFM analysis. (A)The cellular uptake of the PEI/DNA_high NPs was divided into three parts. (B) The trajectory analysis of the PEI/DNA_high NPs, and the amplified trajectory of the bulky NPs. (C) The cellular uptake of the bulky NPs tabbed with the trajectory timely; (D) the normalized lifetime histogram of trajectories; (E) mean square displacement (MSD) analysis of the bulky NP trajectories in and out of the cell in Figure 5D; (F) the trajectory of the bulky NPs is shown as x coordinate, y coordinate and amplitude over time. Scale bar, 20 μm.

 Figure 6 

Effects of gene transfection by endocytosis inhibitors. (A, C, E) The transfection relative positive level. (B, D, F) The protein expression relative positive level.

Subcellular distribution of the two groups of PEI/DNA NPs

The subcellular distribution of the two groups of PEI/DNA NPs was examined. The lysosome trap is a primary barrier to effective gene delivery [22]. DNA is not only difficult to escape from lysosomes but also readily enzymatically degraded in lysosomes. After a 4-h incubation with the NPs that were labeled with YOYO-1 (green), the cells were observed by confocal laser scanning microscopy (CLSM) followed by LysoTracker Red DND-99 (red) staining. The co- localization of lysosomes and NPs was shown in 2D and 3D confocal images (Figure 7A), and the co-localization percentage was 55.6% for the PEI/ DNA_low NPs and 40.5% for the PEI/DNA_high NPs, quantitatively analyzed by ImageJ (Figure 7B).

Furthermore, the co-localization of the macropinosomes and the NPs was examined by using the macropinosome probe dextran rhodamine B and 2D and 3D confocal imaging (Figure 8A). The significant co-localization indicated by yellow color was observed in the PEI/DNA_high NP group. The co-localization percentage was 66.4% for the PEI/DNA_high NP group, compared to 38.3% for PEI/DNA_low NP group (Figure 8B). The results further demonstrated that the macropinocytosis was the major mechanism for the enhanced transfection efficiency of the large PEI/ DNA_high NPs.

Observation of the disassociation of DNA and PEI in cells

As the PEI/DNA_high NPs displayed a less compact pattern and a botryoid shape, it was thus hypothesized that such structure could facilitate the disassociation of DNA from the complex inside the cells and the subsequent gene transfection.

 Figure 7 

The results of co-localization of the lysosomes and NPs. (A) The 2D and 3D confocal images. DNA is shown in green, lysosomes stained with LysoTracker Red DND-99 are shown in red, and the cell nuclei are shown in blue. (B) The co-localization percentage of the lysosomes and NPs. Scale bar, 20 μm.

 Figure 8 

The results of co-localization of the macropinosomes and NPs. (A) The 2D and 3D confocal images. DNA is shown in green, macropinosomes labeled with Dextran Rhodamine B are shown in red, and the cell nuclei are shown in blue. (B) The co-localization percentage of the macropinosomes and NPs. Scale bar, 20 μm.

 Figure 9 

Observation of the disassociation of DNA and PEI by FRET. (A) The FRET effect was present in the PEI^Cy5/DNA^Cy3 in varying mass ratios. (B) The 3D confocal images of the disassociation of the two groups of NPs in the cell at 4, 8, and 12 h. PEI was shown in red, DNA was shown in green, the cell nuclei were shown in blue, and the co-localization of PEI and DNA was shown in yellow. Scale bar, 20 μm. (C) Quantitative analysis of the FRET efficiency.

The disassociation process was observed by fluorescence resonance energy transfer (FRET) technique. DNA and PEI were labeled with Cy3 (green) and Cy5 (red) dye, respectively, which were a pair of donor and acceptor used for FRET. The PEI^Cy5/DNA^Cy3 NPs with different mass ratios were measured using a fluorospectrometer. The results showed that the complexation of PEI^Cy5/DNA^Cy3 resulted in the significantly decreased emission fluorescence intensity of Cy3 and the increased fluorescence intensity of Cy5 (Figure 9A).

Then the disassociation of the two groups of NPs in the cell was observed by CLSM at 4, 8, and 12 h. Over the time, along with the gradual dissociation of DNA^Cy3 (green) from PEI^Cy5 (red), and the FRET effect weakened. The 3D confocal images (Figure 9B) showed the fluorescence recovery of DNA^Cy3, which was more evident in the PEI/DNA_high NPs group than in the PEI/DNA_low NPs group, suggesting the higher intracellular disassociation efficiency for the PEI/DNA_high NPs.

As shown in Figure 9C, the FRET of the two NPs was gradually decreased from 4 to 12 h, indicating that DNA gradually dissociated from PEI in the cells. The FRET (quenched) efficiency of the PEI/DNA_high NPs was lower than the PEI/DNA_low NPs over the time. For instance, at the 12-h mark, the quenched rate was 68% for the PEI/DNA_high NPs compared to 78% for the PEI/DNA_low NPs, demonstrating the higher cytoplasmic disassociation of the PEI/DNA_high NPs.

Nuclear uptake of the PEI/DNA NPs

DNA must be delivered into the nucleus to access to the transcriptional machinery. The nuclear uptake of DNA is a key step for transfection. The DNA nuclear uptake percentage of the PEI/DNA_high NPs was higher than that of the PEI/DNA_low NPs, analyzed by FACS (Figure 10A). Importantly, the DNA nucleic uptake amount, represented by the total fluorescence intensity, was also significantly higher in the PEI/DNA_high NPs group (Figure 10B). Therefore, the increased intranuclear delivery of DNA was a mechanism underlying its enhanced transfection efficiency of the PEI/DNA_high NPs group.

 Figure 10 

Nuclear uptake of DNA in the two groups of NPs. (A) Quantitative analysis of the nuclear uptake rate. (B) The total fluorescence intensity of the nuclei.

 Figure 11 

(A) Western blot analysis results of TRAIL expression level in HeLa cells after gene transfection of the two groups of PEI/pTRAIL NPs. (B) The results of anti-tumor activity of the two groups of PEI/pTRAIL NPs in vitro.

The in vitro antitumor activity of the PEI/DNA NPs

The pTRAIL DNA was used as a therapeutic gene in this study. After transfection, the Western blot analysis showed that the expression of TRAIL protein was higher in the large PEI/pTRAIL_high NPs group (Figure 11A). Accordingly, the PEI/pTRAIL_high NPs also showed higher antitumor efficacy in the HeLa cells, compared to the PEI/pTRAIL_low NPs (Figure 11B).

Besides, the materials-associated cytotoxicity of the PEI/DNA NPs was investigated by using an empty plasmid DNA. Both groups of NPs did not show apparent cytotoxicity (cell viability > 90%) at a concentration up to 3 µg/mL, and there was no significant difference between the two groups (Figure 11B).

The in vivo therapeutic effects of the PEI/DNA NPs in a cervical tumor xenograft model

The therapeutic efficacy of the two groups of NPs was investigated in a HeLa cervical tumor xenograft mouse model. Our previous demonstrated that pTRAIL was a potent therapeutic gene in various cancers [23-25]. Tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) is the key protein inducing apoptosis through action on the death receptors DR4 and DR5 [26].

Both kinds of NPs inhibited tumor growth and prolonged survival time. The PEI/DNA_high NPs showed a higher inhibition rate of tumor growth of 74.4%, in sharp contrast to 44.8% for the PEI/DNA_low NPs (Figure 12A-D). The animals receiving PEI/ DNA_high NPs all survived during the treatment.

Accordingly, the TRAIL expression in the tumors dissected from the mice treated with the PEI/DNA_high NPs was higher than that observed in the PEI/DNA_low NPs group, as determined by both Western blotting and immunohistochemistry (Figure 12F-G). Furthermore, the TUNEL assay in the tumors also exhibited significant apoptosis induced by the PEI/DNA_high NPs (Figure 12H). These results were in good agreement with the results of the tumor inhibition rate.

Interestingly, DR5 upregulation was found in the PEI/DNA_high NPs (Figure 12F). It was reported that virus transfection can stimulate the upregulation of DR5 expression [27]. It was thus suspected that the PEI-mediated transfection could have a similar effect on DR5 upregulation. Also, the generation of reactive oxygen species (ROS) in the apoptosis process could contribute to the up-regulation of DR5 [28]. We also found the PEI/DNA_high NPs induced the higher intracellular ROS level than the counterpart (Figure S8).

 Figure 12 

(A) Tumor volume changes in the treatment regimen (n=8). (B) The presentation of tumor tissues after treatment. (C, D) The tumor weight at the endpoint and the tumor inhibition rate. (E) The survival rate in the treatment regimen. (F) Western blot analysis results of TRAIL expression and DR5 level in tumor tissues. (G) Images of immunohistochemical staining for the examination of TRAIL protein expression. (H) Images of TUNEL-stained tumor sections for evaluating apoptosis. Scale bar, 20 μm.

The side toxicity of the NPs was preliminarily evaluated. During the treatment course, there were no obvious changes in body weight in both NPs groups (Figure S9A). The organ coefficient (i.e., a ratio of the weight of an organ to the body weight) of the mice at the experimental endpoint was not significantly different compared to the control group, except for a slight increase in the liver coefficient in both groups (Figure S9B). Histological examination showed no significant pathological changes (Figure S9C). Although PEI is known for its cytotoxicity, our method that involved a low dose for local application was not found with unwanted toxicities, rendering it potential for translation. Overall, the results indicated that the PEI/DNA_high NPs had better in vivo therapeutic effects than the PEI/DNA_low NPs due to the enhanced gene transfection efficiency.

The in vivo therapeutic effects of the PEI/DNA NPs in a peritoneal HeLa tumor model

The clinical use of local-regional administration in cancer treatment has also been gradually increased [29]. PEI-based nanomedicines have been used as local-regional gene therapy for patients with bladder, ovarian and pancreatic cancer in clinical trials [30]. The therapeutic potential of the large PEI/pTRAIL NPs was further demonstrated by using a peritoneal HeLa tumor model, a mimic of a late stage of cervical metastasis of peritoneum [31]. Intraperitoneal therapy has been used in peritoneal metastasis for the optimized local drug delivery and improved clinical outcome [32]. Our results revealed that the intraperitoneal administration of both the PEI/pTRAIL NPs inhibited the tumor growth. The PEI/pTRAIL_high NPs showed a high inhibition rate of tumor growth of 64.2%, in contrast to 39.1% for the PEI/pTRAIL_low NPs (Figure 13A-D), without obvious side toxicity signs (Figure 13E-F).

Discussion

At the cellular level, non-viral vectors consistently are hindered by numerous extra- and intracellular obstacles, such as cellular uptake, endosomal escape, nuclear entry, transcription and protein expression [22, 33]. This presented work revealed that the formulation process parameters (e.g., the mixture volume or concentration) yielded a significant impact on gene transfection of PEI/DNA NPs. Our work showed the small operation volume (i.e., high reaction concentration) resulted in larger particle size due to the low-degree ionization of the polymers and the consequent less compact interaction.

Though the conventional perception was that the small NPs are superior to the large ones in systemic delivery because the large ones are prone to be cleared away from the bloodstream [34], it is still difficult to reach a conclusion in gene transfection. Size is also a key factor controlling the intracellular fate [35]. For example, the small NPs could have higher cellular uptake efficiency than the large NPs, but the latter could exhibit higher endosome escape capacity and thus yield enhanced gene transfection [36]. However, the mechanisms for enhanced transfection of the large NPs have not been fully elucidated yet. Multiple factors could be involved in the gene transfection, such as physical and biological issues. For example, it was reported that gravitational sedimentation of NPs was an important factor that benefited the large NPs for the in vitro transfection [2].

PEI and DNA are polyelectrolytes, and their interaction can be treated as polyelectrolyte complex. The chain conformations in linear polymers with a uniformly distributed charge reflect a balance among the intramolecular repulsion of charged segments [37]. Therefore, the high ionization results in a flexible linear conformation, while the polymers at low ionization tend to form a curl conformation [38, 39], because of insufficient intramolecular repulsion. Low concentration facilitates the ionization of the charged polymers [40], and the highly ionic and extended polymer chains can readily bind with other polymers with the counterion with strong interaction. Conversely, the polymers with low ionization and curled confirmation tend to form less compact polyelectrolyte complex with the counterion polymers.

 Figure 13 

Therapeutic efficacy in the peritoneal HeLa tumor model treated with the PEI/pTRAIL NPs. (A) Treatment regime. (B) The average tumor weights. (C) The tumor inhibition rate. (D) The dissected tumor nodules of mice (n=6). (E) The body weight changes over the regimen. (F) The organ coefficients.

The interaction of ionic components can be described using the Coulomb's law:

where k is Coulomb's constant (k ≈ 9×10⁹ N m² C^-2), q₁ and q₂ are the signed magnitudes of the charges, and the scalar r is the distance between the charges. Generally, the increased charges and the reduced distance between the ionic components result in the strong interaction force, forming the compact complex. This can be accounted for the formation of small and compact NP in the low concentration group (PEI/DNA_low) but large NP in the high concentration group.

An interesting finding from our studies was that the cellular uptake percentages (represented by the positive rate) of both NPs were close, but the uptake amount (represented by the total fluorescence intensity) was significantly higher in the PEI/DNA_high NPs than the PEI/DNA_low NPs. It suggested that the macropinocytosis pathway was more highly efficient to engulf the NPs compared to the clathrin-mediated uptake. Macropinocytosis is associated with the generation of the large endocytic vesicles by driving by the actins and plasma membrane evaginates, thus enabling to engulf a large number of extracellular substances.

Our results indicated that macropinocytosis facilitated a greater amount of NPs into a cell than other endocytosis pathways. Moreover, the large PEI/DNA_high NPs had higher cytoplasmic dissociation efficiency and led to enhanced intranuclear delivery.

PEI-based vectors have poor systemic delivery efficiency in the blood circulation, which results in low overall delivery efficiency in vivo and hinders the systemic therapy in clinical application [41]. Recently, gene therapy via local-regional administration has obtained great success, representing the first directly administered gene therapy product (Luxturna) approved in the U.S. for hereditary retinal dystrophies via subretinal injection. Therefore, the local-regional administration provides a promising strategy for bypassing the inherent shortcomings of PEI.

Conclusions

It was first revealed that the formation of PEI/DNA NPs was significantly affected by the reaction concentration. The PEI and DNA that complexed at a high concentration tended to form a large and less compact NPs, compared to that at a low concentration. As a result, the large PEI/DNA_high NPs performed the enhanced gene transfection via the mechanisms of macropinocytosis-mediated cellular uptake, effective dissociation and DNA release, and the enhanced intranuclear delivery. By contrast, the PEI and DNA that complexed at a low concentration tended to form a small and compact NPs, which preferred the clathrin-mediated endocytosis pathway and confronted the endosome barrier against effective cytoplasmic delivery. These findings shed light on the importance of formulation process optimization (e.g., reaction concentration) that has long since been ignored, and thus provide a better understanding of the formulation process effect on nano-structural properties and gene transfection, laying a theoretical basis for rational design of the experimental process.

Materials and Methods

Materials

Linear PEI_25K was purchased from Polysciences (USA). Chlorpromazine, nystatin, and cytochalasin D were purchased from Sigma-Aldrich (USA). Nuc-Cyto-Mem Preparation Kit was purchased from Applygen Technologies (Beijing, China). The plasmids of peGFP-N1 encoding enhanced green fluorescent protein, pRFP encoding red fluorescent protein, and pGL4.13 encoding luciferase were propagated in a DH5-strain of E. coli and purified by using a QIAGEN Plasmid Maxi Kit (Germany). YOYO-1, LysoTracker Red DND-99, DIO, dextran rhodamine B (MW 70 kDa) were purchased from Invitrogen (USA). The 5-TAMRA-SE was purchased from MedChem Express (USA). Fetal bovine serum (FBS) and RPMI 1640 medium were purchased from Thermo Fisher Scientific (USA). Hoechst 33342 Staining Solution for Live Cells, DAPI staining solution, RIPA lysis buffer, 0.25% trypsin-EDTA, BCA microplate protein assay kit, and ROS detection kit were obtained from Beyotime Institute of Biotechnology (Haimen, China). Luciferase Assay System Kit was purchased from Promega (USA). Anti-DR5, anti- TRAIL, and anti-GAPDH were purchased from Cell Signaling Technology (USA). All of the other reagents were of analytical grade and purchased from Sinopharm Chemical Reagent Co., Ltd (Shanghai, China). Branch PEI_25K was purchased from Sigma-Aldrich (USA).

Cell culture and animals

Human cervical cancer HeLa cells, MCF-7 cells, H/T cells, and A549T cells were obtained from the Cell Bank of Chinese Academy of Sciences (Shanghai, China). DC2.4 cells, a murine dendritic cell line [42], were kindly provided by Prof. Ying Hu (Wenzhou Medical University, Zhejiang, China). The cells were cultured in Gibco® RPMI 1640 medium containing 10% FBS, 100 μg/mL streptomycin, and 100 U/mL penicillin in a humidified atmosphere at 37°C and 5% CO₂. The female BALB/c nude mice (3-4 weeks old) were purchased from SLAC Animal Inc. (Shanghai, China) and housed in specific pathogen-free conditions. The in vivo experimental procedures were approved by the Animal Care and Use Committee of Shanghai Institute of Materia Medica.

Preparation of two types of the PEI/DNA NPs

Two types of the PEI/DNA NPs were prepared using the same procedure and the same amount of PEI and DNA in pure water but at different concentrations. The high-concentration group (PEI/ DNA_high) was prepared using 0.2 mg/mL of plasmid DNA and PEI (equal to a total 20 μL), while the low-concentration group (PEI/DNA_low) using 0.02 mg/mL of DNA and PEI (equal to a total 200 μL). In specific, the PEI aqueous solution was added to the equal volume of DNA aqueous solution (1.3:1, w/w), and after gentle mixing, the mixture was incubated at 37°C for 30 min. The NPs were freshly prepared before use.

Particle size and zeta potential analysis

The particle size and zeta potential of the PEI/DNA NPs were measured in water or serum-containing medium using the ZetaSizer Nano ZS90 Size Analyzer (Malvern Panalytical, Brighton, UK), and the stability of the NPs was evaluated by detecting the particle size change at varying time points. The final concentration was diluted to equally 3 μg/mL DNA with the final volume 1 mL for particle size and zeta potential analysis of each formulation.

Transfection experiments

HeLa cells were seeded in the 12-well plates at a density of 1 × 10⁵ cells per well. After 20-h culture, the cells were treated with the same amount (1 μg DNA per well) of the PEI/DNA NPs dispersed in the fresh RPMI 1640 medium without FBS for 4 h at 37 °C, and then cultured with the fresh completed medium for 24 h to allow gene expression. The plasmid DNA reporter (peGFP-N1, pRFP, or pGL4.13) was used in the transfection studies. The transfection efficiency of peGFP-N1 or pRFP was measured using a flow cytometer (BD Pharmingen, San Jose, CA, USA), and data analysis was performed using FlowJo software. For the transfection efficiency assay of pGL4.13, the cells were harvested and treated using 200 μL of the RIPA lysis buffer. After centrifugation at 12,000 g for 20 min, the luciferase activity of the supernatants was detected using the Luciferase Assay Kit, and luminescence was measured with the EnSpire Multimode Plate Reader (PerkinElmer, Waltham, MA, USA). Luminescence was normalized to the protein concentration of each sample, which was measured using the BCA Microplate Protein Assay Kit. Luciferase activity was designated as RLU/mg protein. Moreover, DC2.4 cells, BMDCs, MCF-7 cells, H/T cells and A549T cells were also performed the transfection experiment as the HeLa cells.

Cellular uptake of the two groups of PEI/DNA NPs

The plasmid DNA was labeled with YOYO-1 dye. The HeLa cells were seeded into the 12-well plates at a density of 1 × 10⁵ cells per well. After 20-h culture, they were treated with the same amount of the PEI/DNA NPs in 1 mL fresh RPMI 1640 medium without FBS for 4 h at 37 °C. The cells were thoroughly washed with PBS and fixed in 4% paraformaldehyde. After staining with DAPI, the cells were observed by CLSM (TCS-SP8 STED; Leica Microsystems, Mannheim, Germany). For quantitative measurement, the cells were thoroughly washed and collected, and then analyzed with a flow cytometer using the FL1 channel. Moreover, the cellular uptake experiments were also performed in DC2.4 cells and BMDCs.

Observation of cellular uptake

The PEI/DNA NPs were labeled with 5-TAMRA-SE dye. The HeLa cells were seeded into the glass plates. After 20-h culture, the cell membrane was labeled with DIO dye and then treated with the same amount of the PEI/DNA NPs in 1 mL fresh RPMI 1640 medium without FBS. The living cells were immediately observed by TIRFM (Olympus, Japan). The fluorescence images were captured every 5 s, and the nanoparticles were analyzed by single-particle tracking (SPT) technique programmed by MATLAB software.

Influence of polyelectrolyte concentrations on the structure of PEI chains via zeta potential and hydrodynamic diameter analysis

Zeta potential and hydrodynamic diameter of the NPs were measured to investigate the structure of PEI chains at various polyelectrolyte concentrations. In brief, the PEI aqueous solution was prepared at different concentrations (0.02, 0.026, 0.05, 0.1, 0.2, 0.26, 0.5, and 1.0 mg/mL). The zeta potential and hydrodynamic diameter of the PEI molecules were measured using the ZetaSizer Nano ZS90 Size Analyzer (Malvern Panalytical Ltd, UK). In addition, the zeta potential and hydrodynamic diameter of the PEI/DNA_low NPs (C_PEI = 0.026 mg/mL) and the PEI/DNA_high NPs (C_PEI = 0.26 mg/mL), were also measured.

Analysis of the effects of gene transfection by endocytosis inhibitors

The plasmid peGFP-N1 was used as a reporter gene. The HeLa cells were seeded in the 12-well plates at a density of 1 × 10⁵ cells per well. After 20-h culture, the cells were treated with various endocytosis inhibitors for 1 h (chlorpromazine at 10 μM, 20 μM, or 40 μM; nystatin at 10 μM, 20 μM, or 40 μM and cytochalasin D at 1 μM, 5 μM, or 10 μM). The cells were then treated with the same amount of PEI/DNA_low or PEI/DNA_high NPs in the fresh RPMI 1640 medium without FBS for 4 h at 37 °C. After 4-h treatment of the NPs, the cells were cultured with the fresh complete RPMI 1640 medium for 24 h to allow gene expression. The fluorescence images were observed by fluorescence microscope (Zeiss, Germany). Meanwhile, the cells were harvested and analyzed with a flow cytometer.

Observation of intracellular distribution of the NPs

The plasmid DNA was labeled with the YOYO-1 dye. The HeLa cells were seeded into the glass plates. After 20-h culture, the cell nuclei were stained with Hoechst 33342. The cells were then treated with the NPs for 4 h at 37 °C, and at the mark of 2 h during the cellular uptake experiment, a macropinosome dye (dextran rhodamine B, 70 kDa) was added to the culture medium with another 2-h incubation with the cells. The cells were stained with LysoTracker Red DND-99 for 30 min. The cells were thoroughly washed with PBS, fixed in 4% paraformaldehyde, and observed by CLSM. The co-localization percentage was analyzed by ImageJ software.

Atomic force microscopy (AFM) observation

The PEI/DNA NPs were added to the surface of freshly cleaved mica for 20 min. The mica surface was then gently rinsed with sterile water for 10 times, followed by AFM observation (Bruker Scientific Instruments, Bremen, Germany) in the peakforce mode using ScanAsyst-Fluid⁺ probes with standard silicon tips (Bruker). The PEI solution was used as the control group. AFM images were analyzed using NanoScope Analysis software. The average value of particle peak height was a result of counting 589 particles in the PEI/DNA_high group and 2379 particles in the PEI/DNA_low group.

Stimulated emission depletion (STED) microscopy

The plasmid DNA was labeled with YOYO-1 dye, and PEI was labeled with 5-TAMRA-SE dye. The PEI/DNA NPs were added to the surface of freshly cleaved mica and incubated for 20 min. The mica surface was gently rinsed with distilled water 10 times and dried at room temperature. The samples were observed by CLSM operating in the STED mode.

Fluorescence resonance energy transfer (FRET) effect

PEI was chemically labeled with Cy5 NHS ester, and the plasmid DNA was chemically labeled with Cy3 dye. PEI^Cy5 and DNA^Cy3 were mixed at the same volume but at different mass ratios (0.2:1, 0.5:1, 1.3:1, 2:1). The mixtures were incubated at 37 °C for 30 min. The observation of FRET effect was performed by measuring the emission fluorescence intensity of Cy3 at 547 nm using a fluorospectrometer (F4600; Hitachi, Japan). The HeLa cells were seeded into the glass slices at a density of 1 × 10⁵ cells per well. After 20-h culture, the cell nuclei were stained with Hoechst 33342 Staining Solution for Live Cells for 10 min. The cells were then treated with the same amount of the PEI^Cy5/DNA^Cy3 NPs in the fresh RPMI 1640 medium without FBS for 4 h at 37 °C. To investigate the disassociation of PEI and DNA, the cells were thoroughly washed with PBS and fixed in 4% paraformaldehyde at the time points of 4, 8, and 12 h, followed by CLSM observation. For quantitative analysis of the FRET efficiency, the cells were analyzed by flow cytometry. The PEI/DNA and PEI/DNA^Cy3 NPs were set as the unlabeled and donor-labeled controls.

The FRET efficiency of the two groups of NPs in the cell was quantitatively analyzed by flow cytometry [43]. The FRET efficiency (E) was calculated according to the following equation:

,

where I₀ was the fluorescence intensity of the unlabeled sample, I_D was the fluorescence intensity of the donor-labeled sample, and I_DA was that of the double-labeled sample.

Nuclear transport of the two groups of PEI/DNA NPs

The plasmid DNA was chemically labeled with Cy3 dye. The HeLa cells were seeded into the 12-well plates at a density of 1 × 10⁵ cells per well. After 20-h culture, they were treated with the same amount of PEI/DNA NPs in the fresh RPMI 1640 medium without FBS for 4 h at 37 °C, and then cultured with the fresh complete RPMI 1640 medium. The cells were thoroughly washed with PBS and harvested at 4, 8, and 12 h time points. The cell nuclei were isolated using the Nuc-Cyto-Mem Preparation Kit and analyzed using flow cytometry.

In vitro transfection and cytotoxicity assay of PEI/pTRAIL NPs

As a therapeutic gene, pTRAIL was used to investigate the in vitro treatment efficacy. The HeLa cells were seeded in the 12-well plates at a density of 1 × 10⁵ cells per well. After 20-h culture, the cells were treated with the same amount (1 μg pTRAIL per well) of the PEI/pTRAIL NPs dispersed in the fresh RPMI 1640 medium for 4 h at 37 °C, and then cultured with the fresh completed medium for 48 h to allow gene expression. After transfection, the cells were harvested for Western blot analysis to detect the TRAIL expression.

For the in vitro cytotoxicity assay, the HeLa cells were seeded in the 96-well plates. For the control groups, the PEI/pDNA NPs were prepared by using empty plasmid. The cells were treated with the NPs dispersed in the fresh RPMI 1640 medium without FBS for 4 h at 37 °C, and then cultured with the fresh completed medium for 48 h. Cytotoxicity was then measured by a standard MTT assay. Briefly, MTT solution (20 μL, 5 mg/mL) was added to each well, after which the cells were incubated for another 4 h. After removal of the medium, 200 μL of DMSO was added to each well, and the absorbance was measured at 490 nm using a microplate reader (Thermo Fisher Scientific, Waltham, MA, USA). The cell viability (%) was calculated according to the following equation:

Measurement of intracellular ROS

After 24-h transfection of HeLa cells with the PEI/pTRAIL NPs as the procedure described above, the cells were harvested and stained using a ROS detection kit according to the manufacturer's protocol. The samples were analyzed by flow cytometry.

In vivo antitumor experiments with local administration

The subcutaneous tumor xenograft model was developed by s.c. injection of the HeLa cells (4 × 10⁶ cells/mouse). When the tumor volume reached about 100 nm³, the mice were daily treated with PBS, PEI/pTRAIL_low, and PEI/pTRAIL_high NPs via intratumoral administration at a dose of 50 µg/kg of pTRAIL per mouse (eight mice per group), around the 1/10 dose of the commonly used dose of i.v. injection [23, 25]. After injection, the pinhole was sealed by medical glue to accelerate the healing. The body weight and tumor size (measured with a caliper) were recorded. The estimated tumor volume was calculated as follows:

,

where a is the shortest diameter and b is the longest diameter.

At the experimental endpoint, the mice were sacrificed and the major organs and tumors were harvested to measure the organ coefficient and tumor weight. The organ coefficient was calculated by comparing each organ weight between a treatment group and the PBS control group, and the tumor inhibition rate was calculated by comparing the tumor weight between a treatment group and the PBS control group. The organs were fixed in 4% paraformaldehyde for histological examination by hematoxylin and eosin staining. Immunohistochemical staining of the tumor slices was performed to observe TRAIL expression, and Western blot analysis was conducted to detect the TRAIL and DR5 expression. The TUNEL assay was performed to detect apoptosis.

In vivo gene therapy experiments with regional administration

Abdominally disseminated cervical tumor model was established by i.p. inoculation of the HeLa cells (4 × 10⁶ cells/mouse) into the nude mice. Six days after inoculation, the mice were treated with water, PEI/pTRAIL_low, and PEI/pTRAIL_high NPs via i.p. injection at a daily dose of 0.25 mg/kg of pTRAIL per mouse (six mice per group). After eleven times treatment, the mice received no further additional treatment for another six days. The body weight was detected every day. At the experimental endpoint, the mice were sacrificed and the major organs and tumors in the peritoneal cavity were carefully harvested to measure the organ coefficient and tumor weight.

Statistical analysis

All quantitative data are presented as the mean ± standard deviation (SD), all of which were repeated at least three times. Statistical significance was analyzed with the Student's t-test. P values less than 0.05 were considered statistically significant.

Acknowledgements

We are thankful for the support from 973 Program, China (2014CB931900) and NFSC, China (81673382, 81402883, 81422048, and 81521005), the Strategic Priority Research Program of CAS (XDA12050307), National Special Project for Significant New Drugs Development (2018ZX09711002-010-002), CAS Scientific Research and Equipment Project (YZ201437), SANOFI-SIBS Scholarship Program, Youth Innovation Promotion Association of CAS, and the Fudan-SIMM Joint Research Fund (FU-SIMM20174009). We also thank the technical assistance from the Molecular Imaging and Electron Microscopy Core Facilities, SIMM.

Supplementary Material

Supplementary figures and tables.

Supplementary Video.

Competing Interests

The authors have declared that no competing interest exists.

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Author contact

Corresponding author: Yongzhuo Huang, Ph.D., Professor of Pharmaceutics, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 501 Haike Rd, Shanghai 201203, China. Tel/Fax: +86-21-2023-1981; Email: yzhuangac.cn

Received 2018-9-30
Accepted 2019-1-3
Published 2019-2-28

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